is computed independently. If you want to use this class in the
versions of ITK.
Post by SisiDear Francois,
Well, yes, this publication is quite old. But currently, the
implementation of itk:ThinPlatSplineKernelTransform still could not
handle the registration problem. The reason is, that the jacobian
calculation is not implemented. I have tried to use TPS to do non-rigid
image registration ( but not warping) and got this the exception ("jacobian
must implemented in subclasses of kernel transform"). I hope this
publication from 2007 could help me, because it address this problem
directly.
Or maybe you know another reason for this exception?
Thank you for your Cmake file!! This helps me a lot!
best,
Siming
Hello Siming,
It looks like this publication is a little old (2007). A lot has changed
in ITK since this article has been written. The registration and
transformation framework has been greatly improved, and the ThinPlateSpline
can now be used in the registration framework (see [1]). If it is what you
were looking for, you may not need to integrate the code of the article you
mention in ITK.
As for using the code that is available in the Insighe Journal article,
one would need to first adapt the CMakeLists.txt file to be able to compile
the code (see the quick adaptation of the CMakeLists.txt I wrote below).
And then one would need to update the code to compile this project with a
recent version of ITK.
Francois
cmake_minimum_required(VERSION 2.8.12)
# This is based on the Insight Journal CMake Template
#Change PROJECT_NAME to the name of your project
PROJECT(KERNEL_TRANSFORM)
ENABLE_TESTING()
find_package(ITK REQUIRED)
include(${ITK_USE_FILE})
#the following block of code is an example of how to build an executable in
#cmake. Unmodified, it will add an executable called "MyExe" to the project.
#MyExe will be built using the files MyClass.h and MyClass.cxx, and it will
#be linked to all the libraries you specified above.
#You can build more than one executable per project
ADD_EXECUTABLE(itkSplineKernelTransform2Test
itkSplineKernelTransform2Test.cxx)
TARGET_LINK_LIBRARIES(itkSplineKernelTransform2Test ${ITK_LIBRARIES})
ADD_EXECUTABLE(TPSDeformableRegistration TPSDeformableRegistration.cxx)
TARGET_LINK_LIBRARIES(TPSDeformableRegistration ${ITK_LIBRARIES})
#the following line is an example of how to add a test to your project.
#Testname is the title for this particular test. ExecutableToRun is the
#program which will be running this test. It can either be a part of this
#project or an external executable. After that list any args that are needed
#for this test. Include as many tests as you like. If your project doesn't have
#any tests you can comment out or delete the following line.
ADD_TEST(SplineKernelTransform2Test itkSplineKernelTransform2Test)
ADD_TEST(TPSDeformableRegistration TPSDeformableRegistration
${CMAKE_SOURCE_DIR}/data/transformpoints.txt ${CMAKE_SOURCE_DIR}/data/
BrainProtonDensitySliceWarped.png ${CMAKE_SOURCE_DIR}/data/
BrainProtonDensitySliceBorder20.png output.png diffafter.png
diffbefore.png)
[1] https://itk.org/Doxygen/html/Examples_2RegistrationITKv4_
2ThinPlateSplineWarp_8cxx-example.html
Post by SisiDear Francois,
Thank you for your answer. In my case, I didnâtÂŽt wrote any filter or
module by myself. I just want to try a improved version of
its::KernelTransform, developed by Brooks. The source code can be
downloaded here (http://www.insight-journal.org/browse/publication/145 <
http://www.insight-journal.org/browse/publication/145>). So my question
is really really too simple: How can I integrate those header files and
.txx file into the ITK Framework? If this is a remote module, where can I
find it and how can I build it?
Sorry for this stupid questionâŠ
Thanks for your help!
best,
Siming
Am 11.08.2017 um 22:59 schrieb Francois Budin-3 [via ITK Insight Users]
Hello Siming,
Welcome to ITK! I am not sure if you have had a chance to look at the
ITKSoftwareGuide [1], but it is a great place to find a lot of information.
The chapters that are the most relevant for you are probably Chapter 8 (How
to write a filter) and Chapter 9 (How to create a module). To answer your
question more specifically, the easiest way to integrate a new filter or
new files to ITK is to develop an ITK module. This module can then either
be compiled outside of ITK, or if you think it would be useful to the whole
ITK community, it can be integrated to ITK as a remote module [2].
I hope this helps. Feel free to ask more questions.
Francois
[1] https://www.itk.org/ItkSoftwareGuide.pdf <
https://www.itk.org/ItkSoftwareGuide.pdf>
[2] https://itk.org/Wiki/ITK/Policy_and_Procedures_for_Adding_
Remote_Modules <https://itk.org/Wiki/ITK/Poli
cy_and_Procedures_for_Adding_Remote_Modules>
On Fri, Aug 11, 2017 at 4:11 PM, Sisi <[hidden email] <
Dear all,
I am quite new with ITK. I would like to add some new .h file and .txx
files, which are not a part of the original ITK framework, into the
original ITK Framework and use them together as library. How can I do
it?
I will be very happy to get any Information/hint/guide about it.
best,
Siming
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